This Database currently contains 12 gels consisting of 1185 protein spots information in which 723 proteins where identified and annotated. Individual protein spots in the existing gels can be displayed, queried, analysed and compared in a tabular format based on varios functional categories enabling quick and subsequent analysis.

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Two-dimensional gel electrophoresis (2-DE) and mass spectrometry data of diverse microorganisms and other organisms.

Structural annotations for the proteomes of just under 100 organisms. Using data derived from public databases of translated genomic sequences, representatives from the major branches of Life are included: Prokaryota, Eukaryota and Archaea.

A collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known.

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Three-dimensional structures of natural metabolites.

A platform to query and compare gene expression data during the development of the major model animals (zebrafish, drosophila, medaka, mouse). The high resolution expression data was acquired through whole mount in situ hybridsation-, antibody- or transgenic experiments.

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Information on nucleotide sequences of 5S rRNAs and their genes.

Database of human SERPINA1 gene variants leading to alpha1-antitrypsin deficiency

Human keratinocyte 2D gel protein database from Aarhus and Ghent universities

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Archaeal and bacterial ABC transporter database.

Annotated regulatory binding sites from orthologous promoters.

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A curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace).

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Collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

Affinity database for protein–ligand complexes

Fungal structural and biochemical database.

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A genome/transcriptome database containing gene annotation and high-density oligonucleotide microarray expression data for protein-coding genes from Ashbya gossypii and the model organism Saccharomyces cerevisiae. It also provides access to comparative genomics data from those two fungi as well as Schizosaccharomyces pombe and Neurospora crassa.

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Allergome; a platform for allergen knowledge

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Amyloid precursor families and their amino acid sequence signatures.

Comparative analysis of human and Arabidopsis nucleolar proteomes

Application-specific validation of publicly available antibodies to human protein targets.

Quantitative binding data for peptides binding to MHC Ligand, TCR-MHC Complexes, T Cell Epitope, TAP, B Cell Epitope molecules and immunological protein-protein interactions. AntiJen includes Peptide Library, Copy Numbers and Diffusion Coefficient data.

2-DE PAGE database.

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Aphid genome database

Genomic-scale dataset associated with the eukaryotic pathogens Cryptosporidium.

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Genomic-scale datasets for the eukaryotic pathogen Giardia.

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Genomic-scale dataset associated with the eukaryotic pathogens Plasmodium.

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Genomic-scale datasets associated with the eukaryotic pathogens Toxoplasma.

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Genomic-scale datasets associated with the eukaryotic Trichomonas.

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Kinetoplastid genome resources.

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Integrated database of protein-protein interactions providing access to all known experimentally validated protein-protein interactions (BIND, BioGRID, DIP, HPRD, IntAct and MINT).

Genomic data of P.pacificus, including the physical map, genetic linkage map, EST and BAC end sequence and hybridization data.

Spider toxin database

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A database on a family of Helix-Turn-Helix transcription factors from bacteria.

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Plant membrane proteins.

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ArchDB database of loop structures.

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A database on mammalian miRNAs and their known or predicted regulatory targets. It provides information on origin of miRNAs, tissue specificity of their expressions and their known or proposed functions, their potential target genes as well as data on miRNA families based on their coexpression and proteins known to be involved in miRNA processing.

A public archive for functional genomics data compliant with MIAME- and MINSEQE requirements in accordance with compliant data in accordance with MGED recommendations. Includes gene-indexed expression profiles.

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Genome sequences, associated annotations and functional characterization data for E. coli K-12.

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A collection of active protein sequences, or protein fragments or subsequences, collected in the form of function-oriented databases. The sequences have known biological activity.

A database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms.

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Alternative splicing and transcript diversity.

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ATCC cultures and bioproducts.

ATCC cultures and bioproducts.

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ATCC cultures and bioproducts

Genome-wide map of potential transcription factor and small RNA binding sites in Arabidopsis thaliana.

Aminoacyl-tRNA synthetases database.

Predicted SCOP classifications.

Gene expression in Xenopus laevis.

A benchmark alignment database, including enhancements for repeats, transmembrane sequences and circular permutations.

Bacterial carbohydrate structures.

Berkeley Drosophila genome project EST database.

Berkeley Drosophila genome project database: insertion

Bgee is a database to retrieve and compare gene expression patterns between animal species. Bgee first maps heterogeneous expression data (currently EST, Affymetrix, and in situ hybridization data) on anatomical and developmental ontologies. Then, in order to perform automated cross species comparisons, homology relationships across anatomical ontologies, and comparison criteria between developmental ontologies, are designed.

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Database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.

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BioCyc collection of Pathway/Genome Databases. Each BioCyc database describes the genome and metabolic pathways of a single organism. This includes Escherichia coli K-12 MG1655 model-organism database (EcoCyc) and Multiorganism metabolic pathway and enzyme database (MetaCyc)

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Physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe

A that allows biologists to store, search and retrieve published mathematical models of biological interests. Models present in BioModels Database are annotated and linked to relevants, such as publications, databases of compounds and pathways, controlled vocabularies, etc.

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A database of key numbers in molecular biology, along with relevant references to the original literature, useful comments, and related numbers.

BioSystems is a composite biological pathway and disease database and aims to: (1) serve as a centralized repository of data; (2) connect the biosystem records with associated literature, molecular, and chemical data throughout the Entrez system; and (3) facilitate computation on biological systems data.

Protein-nucleic acid interactions, with various features of protein-nuleic acid interfaces.

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BloodExpress integrates 271 individual microarray experiments derived from 15 distinct studies done on most characterised mouse blood cell types. Gene expression information has been discretised to absent/present/unknown calls.

Northern blots database.

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Biochemical network database for analyzing and visualizing complex biochemical networks and processes.

An online workbench that aids collection, management, analysis, and use of DNA barcodes. It consists of 3 components (MAS, IDS, and ECS) that each address the needs of various groups in the barcoding community.

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Comprehensive enzyme information.

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BriX is a structural classification of protein fragments. The library comprises fragments ranging from 4 to 14 amino acids that are clustered against 6 different distance thresholds.

A database designed to encapsulate and reference information obtained from the complete genome sequence of the gamma-proteobacterium Buchnera species.

Gene database for butterflies and moths.

A collection of European Biological Resource Centre catalogues.

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Central aspergillus data repository (CADRE).

A public database for storing clinical information about tumor samples and microarray data, with emphasis on array comparative genomic hybridization (aCGH) and data mining of gene copy number changes.

CATdb contains data on 105 Arabidopsis transcriptome projects (3262 hybridized samples) in public access out of a total of 172 projects (~6440 hybridized samples). The data are released one year after their production.

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CATH is a hierarchical classification of protein domain structures, which clusters proteins at four major levels: Class (C), Architecture (A), Topology (T) and Homologous superfamily (H). The boundaries and assignments for each protein domain are determined using a combination of automated and manual procedures which include computational techniques, empirical and statistical evidence, literature review and expert analysis.

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The aim of the Complete Arabidopsis Transcriptome MicroArray (CATMA) project was the design and production of high quality Gene-specific Sequence Tags (GSTs) covering most Arabidopsis genes. The GST repertoire is used by numerous groups for the production of DNA arrays for transcript profiling experiments.

The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

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Summary of genomic information currently available for various organisms.

Culture collection of algae and protozoa

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A relational database of coiled-coil structures.

A collection of multiple sequence alignments for ancient domains and full-length proteins.

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A collection of genes and proteins involved in human and yeast cell cycle.

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Information on 4.850 human and animal cell lines that are available in many Italian laboratories and in some of the most important European cell banks and cell culture collections.

A database tool to integrate protein localization and interaction information.

Centrosome:db contains a set of human genes encoding proteins that are localized in the centrosome, either as centrosome constituents or as centrosome visitors.

A database of genotypes for genetic markers that have been typed on the CEPH reference family resource for linkage mapping.

A resource for genomic sequence data and gene and protein information for Candida albicans.

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Devoted to the characterization of complete chromosome sequences by standardized genometric methods, the Comparative Genometrics website displays for sequenced genomes, three different genometric analyses: the DNA walk and the GC and TA skews during the initial phase. Although primarly focused on prokaryotic chromosomes, the CG website posts genometric information on paradigm plasmids, phages, viruses, and organelles.

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Dictionary of molecular entities focused on small chemical compounds. "Molecular entity" includes any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms.

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A database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.) and abstracted bioactivities (e.g. binding constants, pharmacology and ADMET data).

Structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases, including the TOXNET® system. ChemIDplus also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.

CiteXplore combines literature search with text mining tools for biology.

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Public gene expression data via unique approved gene symbols and which represents heterogeneous expression data produced by different technologies in a way that facilitates joint analysis and cross-dataset comparisons.

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Cell line integrated molecular authentication.

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Automatic classification of UniProt Knowledgebase and IPI proteins into groups of related proteins. The clustering is based on analysis of all pairwise comparisons between protein sequences.

Database of osteogenesis imperfecta and type III collagen variants.

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Information on all of the publicly available, complete prokaryotic genomes. Common data types across all genomes in the CMR make searches more meaningful, and cross genome analysis highlight differences and similarities between the genomes.

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Phytopathogenic fungi and oomycete EST database.

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A database for comparative genome analysis of Enterobactericaiae, e.g. Escherichia, Shigella etc..

Annotations for protein structures from the Protein Data Bank (PDB) from several protein structure related sources, including KEGG and ENZYME. The calculated secondary structure from DSSP is included as well as the protein-fold classification databases SCOP and CATH. Further functional and taxonomic annotation is available from Swiss-Prot, the Gene Ontology (GO) and the NCBI Taxonomy.

A two-dimensional polyacrilamide gel electrophoresis federated database.

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Conotoxin peptide sequences and structures.

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Information on physical molecular interactions, biochemical pathways, and gene regulatory networks in human.

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Conserved non-coding blocks from a collection of vertebrate species. Non-coding DNA segments that are conserved across multiple homologous genomic sequences are good indicators of putative regulatory elements.

Two-dimensional polyacrylamide gel electrophoresis federated database.

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The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.

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Reference database for cornyebacterial transcription factors and gene regulatory networks.

Somatic mutation information and related details and information relating to human cancers.

A collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.

Sequence, classification, clustering, and annotation data of crop EST projects.

Clustered regularly interspaced short palindromic repeats.

Catalytic sites in proteins.

An interactive database for cold shock domain (CSD) containing proteins and the bacterial cold shock response.

CTD includes manually curated data describing cross-species chemical–gene/protein interactions and chemical– and gene–disease relationships to illuminate molecular mechanisms underlying variable susceptibility and environmentally influenced diseases.

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A relational database containing all structural proteins of Arthropod cuticle identified to date. Many come from direct sequencing of proteins isolated from cuticle and from sequences from cDNAs that share common features with these authentic cuticular proteins. It also includes proteins from the Drosophila melanogaster and the Anopheles gambiae genomes, that have been predicted to be cuticular proteins, based on a Pfam motif responsible for chitin binding in Arthropod cuticle.

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A standardized resource for researchers to inspect and download cell-cycle datasets.

Information on the molecular structure and functional network of the entirely sequenced, well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae. In addition the data of various projects on related yeasts are used for comparative analysis.

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Structure, function and phylogeny of cytoskeletal and motor proteins.

Cytokine gene polymorphism in human disease.

The Dali Database is based on all-against-all 3D structure comparison of protein structures in the Protein Data Bank (PDB). The structural neighbourhoods and alignments are automatically maintained and regularly updated using the Dali search engine.

Database of protein structure alignments.

Predicted transcription factors in completely sequenced genomes.

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dbEST is a division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms.

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Public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.

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Single nucleotide polymorphisms.

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A nucleotide sequence database.

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Mammalian proteases and diseases.

Blackfan Anemia mutation database.

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Database for eukaryotic sequencing projects.

A searchable databases of diatom ESTs (expressed sequence tags) that can be used to explore diatom biology. Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. On a global scale, they generate around one fifth of the oxygen we breathe.

Database for the biology and genomics of the social amoeba Dictyostelium discoideum.