Pfam

Pfam protein domain database

Large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs).

IDPfam
AccDB-0073
Homehttp://pfam.sanger.ac.uk/
EDAM topicProtein sequence alignment
EDAM topicSequence profiles and HMMs
EDAM topicProtein families
EDAM topicProtein domains
CategoryFamily and domain databases
Taxonall

Available data

Data Format Query Link
Protein family annotation {Pfam entry} HTML Sequence accession (protein) http://pfam.sanger.ac.uk/protein/acc=%s
Protein family annotation {Pfam entry} HTML Pfam accession number http://pfam.sanger.ac.uk/family?acc=%s
Protein family annotation {Pfam entry} HTML Pfam clan ID http://pfam.sanger.ac.uk/clan?acc=%s
Protein family annotation {Pfam entry} HTML NCBI taxonomy ID http://pfam.sanger.ac.uk/proteome?taxId=%s

Example queries

Data Format Query Example
Protein family annotation {Pfam entry} HTML Sequence accession (protein) VAV_HUMAN
Protein family annotation {Pfam entry} HTML Pfam accession number PF07388
Protein family annotation {Pfam entry} HTML Pfam clan ID CL0247
Protein family annotation {Pfam entry} HTML NCBI taxonomy ID 349163