SIMAP

Similarity matrix of proteins (SIMAP)

Pre-calculated protein similarities. It contains published protein sequences and is continuously updated.

IDSIMAP
Homehttp://boinc.bio.wzw.tum.de/boincsimap/
EDAM topicProtein families
Taxonall

Available data

Data Format Query Link
Protein report HTML Identifier {md5 hash of sequence} http://webclu.bio.wzw.tum.de/portal/web/simap/link?p_p_id=LinkPortlet_WAR_SIMAP&p_p_action=1&p_p_state=normal&p_p_mode=view&p_p_col_id=column-2&p_p_col_count=2&method=proteinReport&md5=%s
Database hits (sequence) {SIMAP sequence similarities} HTML Identifier {md5 hash of sequence} http://webclu.bio.wzw.tum.de/portal/web/simap/link?p_p_id=LinkPortlet_WAR_SIMAP&p_p_action=1&p_p_state=normal&p_p_mode=view&p_p_col_id=column-2&p_p_col_count=2&method=sequenceHomologs&md5=%s
Protein report {SIMAP domain architecture similarities} HTML Identifier {md5 hash of sequence} http://webclu.bio.wzw.tum.de/portal/web/simap/link?p_p_id=LinkPortlet_WAR_SIMAP&p_p_action=1&p_p_state=normal&p_p_mode=view&p_p_col_id=column-2&p_p_col_count=2&method=domainHomologs&md5=%s

Example queries

Data Format Query Example
Protein report HTML Identifier {md5 hash of sequence} 5bd410d0d1f3fa2c0607eb453835857f
Database hits (sequence) {SIMAP sequence similarities} HTML Identifier {md5 hash of sequence} 5bd410d0d1f3fa2c0607eb453835857f
Protein report {SIMAP domain architecture similarities} HTML Identifier {md5 hash of sequence} 5bd410d0d1f3fa2c0607eb453835857f