ConsensusPathDB

ConsensusPathDB database of human functional interaction networks

Information on physical molecular interactions, biochemical pathways, and gene regulatory networks in human.

IDConsensusPathDB
Homehttp://cPDB.molgen.mpg.de/
EDAM topicGene regulatory networks
EDAM topicProtein-protein interactions
EDAM topicPathways, networks and models
EDAM topicGene expression and regulation
TaxonHomo sapiens

Available data

Data Format Query Link
Pathway or network report HTML Pathway or network name http://cPDB.molgen.mpg.de/CPDB/search?nameacc=name&keywords=%s&searchspace=Pathway
Identifier metadata {Physical entities} HTML ConsensusPathDB entity name http://cPDB.molgen.mpg.de/CPDB/search?nameacc=name&keywords=%s&searchspace=PhysicalEntity
Identifier metadata {Physical entities} HTML Accession {Physical entity external accession number} http://cPDB.molgen.mpg.de/CPDB/search?nameacc=acc&keywords=PFKL&searchspace=PhysicalEntity
Protein interaction report {Interactions of pathway} HTML Pathway ID (ConsensusPathDB) http://cPDB.molgen.mpg.de/CPDB/getInteractionsOfObjs?objs:list=%s&objtype=p
Protein interaction report {Interactions of physical entity} HTML ConsensusPathDB entity ID http://cPDB.molgen.mpg.de/CPDB/getInteractionsOfObjs?objs:list=%s&objtype=e
Protein interaction report {Shortest interaction path between two physical entities} HTML ConsensusPathDB entity ID; ConsensusPathDB entity ID http://cPDB.molgen.mpg.de/CPDB/shortestPath?objs1:list=%s1&objs2:list=%s2

Example queries

Data Format Query Example
Identifier metadata {Physical entities} HTML ConsensusPathDB entity name puma
Protein interaction report {Interactions of pathway} HTML Pathway ID (ConsensusPathDB) 9494
Protein interaction report {Interactions of physical entity} HTML ConsensusPathDB entity ID 9304
Protein interaction report {Interactions of physical entity} HTML ConsensusPathDB entity ID 31812