AGD

Ashbya genome database (AGD)

A genome/transcriptome database containing gene annotation and high-density oligonucleotide microarray expression data for protein-coding genes from Ashbya gossypii and the model organism Saccharomyces cerevisiae. It also provides access to comparative genomics data from those two fungi as well as Schizosaccharomyces pombe and Neurospora crassa.

IDAGD
AccDB-0001
Homehttp://agd.vital-it.ch/
EDAM topicFungal
EDAM topicGenomes
EDAM topicComparative genomics
EDAM topicGene expression and regulation
EDAM topicOrganism
CategoryOrganism-specific databases
TaxonEremothecium gossypii

Available data

Data Format Query Link
Gene annotation HTML Gene symbol http://agd.vital-it.ch/Ashbya_gossypii/geneview?db=core;gene=%s
Gene annotation (transcript) HTML Gene symbol http://agd.vital-it.ch/Ashbya_gossypii/transview?db=core;transcript=%s
Gene features (exon) HTML Gene symbol http://agd.vital-it.ch/Ashbya_gossypii/exonview?db=core;transcript=%s
Protein report HTML Gene symbol http://agd.vital-it.ch/Ashbya_gossypii/protview?db=core;peptide=%s
Gene annotation HTML Species name; Gene symbol http://agd.vital-it.ch/%s1/geneview?gene=%s2

Example queries

Data Format Query Example
Gene annotation HTML Gene symbol AAL011C
Gene annotation (transcript) HTML Gene symbol AAL011C
Gene features (exon) HTML Gene symbol AAL011C
Protein report HTML Gene symbol AAL011C
Gene annotation HTML Gene symbol ACL127W
Gene annotation (transcript) HTML Gene symbol ACL127W
Gene features (exon) HTML Gene symbol ACL127W
Protein report HTML Gene symbol ACL127W
Gene annotation HTML Gene symbol RLP7
Gene annotation (transcript) HTML Gene symbol RLP7
Gene features (exon) HTML Gene symbol RLP7
Protein report HTML Gene symbol RLP7