Gene3D

Gene3D structural and functional annotation of protein families

Gene3D structural and functional annotation of protein families incorporates several different sources including CATH, DRUGBANK, PFAM etc.

IDGene3D
AccDB-0029
Homehttp://cathwww.biochem.ucl.ac.uk:8080/Gene3D/
EDAM topicProtein families
CategoryFamily and domain databases
Taxonall
Linkinghttp://gene3d.biochem.ucl.ac.uk/Gene3D/linking
SOAPhttp://funcnet.eu/

Available data

Data Format Query Link
Protein family annotation {Gene3D entry} HTML CATH node ID (family) http://gene3d.biochem.ucl.ac.uk/Gene3D/cathLink?family=%s
Protein family annotation {Gene3D entry} HTML CATH domain ID http://gene3d.biochem.ucl.ac.uk/Gene3D/cathLink?domain_id=%s
Protein family annotation {Gene3D entry} HTML CATH node ID (family) http://www.cathdb.info/cgi-bin/GotoCath.pl?cath=%s

Example queries

Data Format Query Example
Protein family annotation {Gene3D entry} HTML CATH node ID (family) 2.10.10.10
Protein family annotation {Gene3D entry} HTML CATH node ID (family) 2.10.10.10
Protein family annotation {Gene3D entry} HTML CATH domain ID 1cukA00
Protein family annotation {Gene3D entry} HTML CATH node ID (family) G3DSA:3.40.30.10
Protein family annotation {Gene3D entry} HTML CATH node ID (family) G3DSA:3.40.30.10