ELM

Eukaryotic linear motif resource (ELM)

A resource for predicting functional sites in eukaryotic proteins. Putative functional sites are identified by patterns (regular expressions). To improve the predictive power, context-based rules and logical filters are applied to reduce the amount of false positives.

IDELM
Homehttp://elm.eu.org/
EDAM topicSequence motifs
EDAM topicProtein functional sites
EDAM topicSequence motifs
Taxonall

Available data

Data Format Query Link
Sequence features (motifs) {ELM report} HTML UniProt ID http://elm.eu.org/basicELM/cgimodel.py?fun=Submit&swissprotId=%s
Sequence features (motifs) {ELM report} HTML UniProt ID; Taxon; GO term ID (cellular compartment) http://elm.eu.org/basicELM/cgimodel.py?fun=Submit&swissprotId=%s1&userSpecies=%s2&userCC=%s3
Sequence features (motifs) {ELM report} HTML Identifier {Protein sequence} http://elm.eu.org/basicELM/cgimodel.py?fun=Submit&sequence=%s

Example queries

Data Format Query Example
Sequence features (motifs) {ELM report} HTML UniProt ID; Taxon; GO term ID (cellular compartment) src_human;10116;GO:0005634
Sequence features (motifs) {ELM report} HTML UniProt ID src_human
Sequence features (motifs) {ELM report} HTML Identifier {Protein sequence} MGSNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL