ProDom

ProDom protein domain database

A comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.

IDProDom
AccDB-0083
Homehttp://prodom.prabi.fr/prodom/current/html/home.php
EDAM topicProtein families
EDAM topicProtein domains
CategoryFamily and domain databases
Taxonall

Available data

Data Format Query Link
Protein family annotation {ProDom entry} HTML ProDom accession number http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=%s
Sequence alignment (protein) {ProDom family alignment} HTML ProDom accession number http://prodom.prabi.fr/prodom/2006.1/cgi-bin/request.pl?db_ent1=%s&wanted=align
Phylogenetic tree HTML ProDom accession number http://prodom.prabi.fr/prodom/2006.1/cgi-bin/request.pl?db_ent1=%s&wanted=tree
Sequence features (motifs) {ProDom domain image} HTML ProDom accession number http://prodom.prabi.fr/prodom/2006.1/cgi-bin/request.pl?CG=0&question=DBLI&query=%s
Sequence alignment (protein) {ProDom family alignment} Text ProDom accession number http://prodom.prabi.fr/prodom/2006.1/cgi-bin/request.pl?db_ent0=%s

Example queries

Data Format Query Example
Protein family annotation {ProDom entry} HTML ProDom accession number PD000023
Sequence alignment (protein) {ProDom family alignment} HTML ProDom accession number PD000023
Phylogenetic tree HTML ProDom accession number PD000023
Sequence features (motifs) {ProDom domain image} HTML ProDom accession number PD000023
Sequence alignment (protein) {ProDom family alignment} Text ProDom accession number PD000023