CATdb

Complete Arabidopsis transcriptome database (CATdb)

CATdb contains data on 105 Arabidopsis transcriptome projects (3262 hybridized samples) in public access out of a total of 172 projects (~6440 hybridized samples). The data are released one year after their production.

IDCATdb
Homehttp://urgv.evry.inra.fr/CATdb
EDAM topicGene expression and regulation
EDAM topicPlant
TaxonArabidopsis thaliana

Available data

Data Format Query Link
Gene annotation (expression) HTML TAIR accession (At gene) http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/cons_diff_id.pl?idnum=%s
Gene annotation {CATdb Gene and Probe info} HTML TAIR accession (At gene) http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/seq_info.pl?ident=%s
Data reference {CATdb Search by keyword} HTML Identifier {Keyword} http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/cons_proj_kw.pl?kwrd=%s
Gene annotation (expression) HTML TAIR accession (At gene) http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/cons_diff_id.pl?idnum=AT1G69880
Gene annotation {CATdb Gene and Probe info} HTML TAIR accession (At gene) http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/seq_info.pl?ident=AT1G69880
Data reference {CATdb Search by keyword} HTML Identifier {Keyword} http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/cons_proj_kw.pl?kwrd=%s

Example queries

Data Format Query Example
Data reference {CATdb Search by keyword} HTML Identifier {Keyword} nitrogen
Data reference {CATdb Search by keyword} HTML Identifier {Keyword} nitrogen