3did

3DID database of 3D interacting domains

A collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known.

ID3did
Homehttp://3did.irbbarcelona.org/
EDAM topicProtein-protein interactions
Taxonall

Available data

Data Format Query Link
Protein structure report (domain) HTML Pfam domain name http://3did.irbbarcelona.org/cgi-bin/query_domain_cgi.pl?draw=graph&domain=%s
Protein structure report (domain) HTML Pfam accession number http://3did.irbbarcelona.org/cgi-bin/query_pfamID_cgi.pl?draw=graph&id=%s
Domain-domain interaction HTML Pfam domain name; Pfam domain name http://3did.irbbarcelona.org/cgi-bin/query_interaction_cgi.pl?domain1=%s1&db=Pfam&domain2=%s2
Domain-domain interaction HTML Pfam domain name; Pfam domain name http://3did.irbbarcelona.org/cgi-bin/query_path_cgi.pl?domain1=%s1&domain2=%s2
Protein structure report (domain) HTML ELM ID http://3did.irbbarcelona.org/cgi-bin/query_peptide_cgi.pl?draw=graph&peptide=%s
Protein-motif interaction HTML Pfam domain name; ELM ID http://3did.irbbarcelona.org//cgi-bin/query_dmi_cgi.pl?domain=%s1&ddb=%&peptide=%s2&mdb=ELM

Example queries

Data Format Query Example
Protein structure report (domain) HTML Pfam domain name SH3_1
Protein structure report (domain) HTML Pfam accession number PF00018
Protein structure report (domain) HTML Pfam domain name Ank
Protein structure report (domain) HTML Pfam domain name SH3_1
Protein structure report (domain) HTML Pfam domain name SH2
Protein structure report (domain) HTML Pfam domain name efhand
Protein structure report (domain) HTML ELM ID LIG_SH3_1
Protein structure report (domain) HTML ELM ID LIG_SH3_1