CMR

Comprehensive microbial genome resource (CMR)

Information on all of the publicly available, complete prokaryotic genomes. Common data types across all genomes in the CMR make searches more meaningful, and cross genome analysis highlight differences and similarities between the genomes.

IDCMR
AccDB-0009
Homehttp://cmr.tigr.org/
EDAM topicProkaryote
EDAM topicGenomes
EDAM topicGenomics
CategoryGenome annotation databases
TaxonBacteria

Available data

Data Format Query Link
Gene annotation HTML Gene ID (JCVI) http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?locus=%s
Gene annotation HTML GenBank identifier http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?type=SP&acc=%s
Gene annotation HTML UniProt accession http://cmr.jcvi.org/cgi-bin/CMR/shared/GenePage.cgi?type=protein_id&acc=%s
Genome metadata {CMR genome page} HTML NCBI taxonomy ID http://cmr.jcvi.org/cgi-bin/CMR/GenomePage.cgi?taxon_id=%s
Genome metadata {CMR genome page} HTML NCBI Genome Project ID http://cmr.jcvi.org/cgi-bin/CMR/GenomePage.cgi?ncbi_project_id=%s

Example queries

Data Format Query Example
Gene annotation HTML Gene ID (JCVI) BA_0001
Gene annotation HTML GenBank identifier AAP24059.1
Gene annotation HTML UniProt accession Q81W35
Genome metadata {CMR genome page} HTML NCBI taxonomy ID 198094
Genome metadata {CMR genome page} HTML NCBI Genome Project ID 309