From extensive analyses of all human transcripts, H-InvDB provides curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, and molecular evolutionary features , protein-protein interactions (PPIs) and gene families/groups.
| ID | H-InvDB |
|---|---|
| Acc | DB-0040 |
| Home | http://www.h-invitational.jp/ |
| EDAM topic | Gene expression and regulation |
| EDAM topic | Gene expression profiling |
| EDAM topic | Mutation and polymorphism |
| EDAM topic | Metabolic pathways |
| EDAM topic | Human disease |
| EDAM topic | Organism |
| EDAM topic | Functional RNA |
| EDAM topic | Gene structure |
| EDAM topic | Protein targeting and localization |
| Category | Organism-specific databases |
| Taxon | Homo sapiens |
| Data | Format | Query | Link |
|---|---|---|---|
| Gene annotation (transcript) | HTML | HIT ID | http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=%s |
| Gene annotation | HTML | HIX ID | http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=%s |
| Gene annotation (transcript) | Text | HIT ID | http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=%s&status=flat |
| Gene annotation | Text | HIX ID | http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0005064&status=flat |
| Gene annotation (transcript) | XML | HIT ID | http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000053961&status=xml |
| Gene annotation | XML | HIX ID | http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0005064&status=xml |