Selectome

Selectome database of positive selection

Database of positive selection based on a rigorous branch-site specific likelihood test.

IDSelectome
Homehttp://bioinfo.unil.ch/selectome/
EDAM topicPhylogenetics
EDAM topicGene family or system
Taxonall

Available data

Data Format Query Link
Phylogenetic tree {Selectome entry} HTML Identifier {Selectome identifier}; Protein family name; Taxon http://bioinfo.unil.ch/cgi-bin/selectome/subfamily.cgi?ac=%s1&sub=%s2&taxon=%s3
Gene annotation {Selectome family} HTML Identifier {Selectome identifier} http://bioinfo.unil.ch/cgi-bin/selectome/getFamily.cgi?query=%s
Data reference {Selectome Xref} HTML Protein identifier {Cross-reference} http://bioinfo.unil.ch/cgi-bin/selectome/getXref.cgi?query=%s
Data reference {Selectome Xref} HTML PDB ID {Cross-reference} http://bioinfo.unil.ch/cgi-bin/selectome/getXref.cgi?query=%s
Data reference {Selectome genes} HTML Identifier {Keyword} http://bioinfo.unil.ch/cgi-bin/selectome/getGene.cgi?query=%s
Data reference {Selectome gene family} HTML Identifier {Keyword} http://bioinfo.unil.ch/cgi-bin/selectome/getGeneFamily.cgi?query=%s

Example queries

Data Format Query Example
Gene annotation {Selectome family} HTML Identifier {Selectome identifier} TF105041
Phylogenetic tree {Selectome entry} HTML Identifier {Selectome identifier}; Protein family name; Taxon TF105041;1;v
Data reference {Selectome genes} HTML Identifier {Keyword} kidney
Data reference {Selectome gene family} HTML Identifier {Keyword} kidney
Data reference {Selectome genes} HTML Identifier {Keyword} Ascc3_F2
Data reference {Selectome gene family} HTML Identifier {Keyword} Ascc3_F2
Data reference {Selectome genes} HTML Identifier {Keyword} BRCA2
Data reference {Selectome gene family} HTML Identifier {Keyword} BRCA2