DRCAT Resource Catalogue

Bioinformatics Web-based Data Resources

0, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z

2dpage - 2D-PAGE proteome database system for microbial research
3dgenomics - 3D-Genomics database of structural annotations for proteomes
3did - 3DID database of 3D interacting domains
3dmet - 3DMET
4dxpress - 4DXpress cross species gene expression pattern database
5srrna - 5S rRNA database

a1atvar - A1ATVar A1-antitrypsin database
aarhus_ghent-2dpage - Human keratinocyte 2D gel protein database from Aarhus and Ghent universities
abcdb - Archaeal and bacterial ABC transporter database (ABCdb)
abs - ABS database of binding sites from orthologous promoters
aceview - AceView genes database
aclame - ACLAME classification of mobile genetic elements
affindb - Affinity database (AffinDB) for protein ligand complexes
aftol - Assembling the Fungal Tree of Life (AFTOL) database
agd - Ashbya genome database (AGD)
allergome - Allergome; a platform for allergen knowledge
amypdb - Amyloid precursor proteins database (AMYPDB)
anpr - Arabidopsis nucleolar protein database (ANPR)
antibodypedia - Antibodypedia database of antibodies to human proteins
antijen - AntiJen database for peptides binding to immunity related proteins
anu-2dpage - Australian National University 2-DE database (ANU-2DPAGE)
aphidbase - Aphid genome database (AphidBase)
apid - Agile protein interaction data analyzer (APID)
eupathdb - Apicomplexan database resources (ApiDB)
apidb_cryptodb - Cryptosporidium genome resources (CryptoDB)
apidb_plasmodb - Plasmodium genome resources (PlasmoDB)
apidb_toxodb - Toxoplasma genome resources (ToxoDB)
apidb_trichdb - Trichomonas genome resources (TrichDB)
apidb_tritrypdb - Kinetoplastid genome resources (TritryPDB)
apidb_giardiadb - Giardia genome resources (GiardiaDB)
appadb - Pristionchus.org P. pacificus database (AppaDB)
arachnoserver - ArachnoServer
arac-xyls - AraC-XylS database of a family of Helix-Turn-Helix transcription factors from bacteria
aramemnon - ARAMEMNON database of plant membrane proteins
archdb - ArchDB database of loop structures
argonaute - Argonaute database of mammalian microRNAs regulatory function
arrayexpress - ArrayExpress repository for microarray data
asap - Systematic annotation package for community analysis of genomes (ASAP)
asc - Active sequence collection (ASC)
aspicdb - Alternative splicing prediction database (ASPICdb)
astd - Alternative splicing and transcript diversity (ASTD) database
atcc - American type culture collection database (ATCC)
atcc_in_host - American type culture collection database (ATCC)
atcc_dna - American type culture collection database (ATCC)
atsd - Aminoacyl-tRNA synthetases database (ATSD)
athamap - AthaMap database of Arabidopsis TFBS predictions
autopsi - AutoPSI database of predicted SCOP classifications
axeldb - Axeldb database of gene expression in Xenopus laevis

balibase - BAliBASE benchmark alignment database
bcsdb - BCSDB database of bacterial carbohydrate structures
bdgp_est - Berkeley Drosophila genome project EST database (BDGP_EST)
bdgp_ins - Berkeley Drosophila genome project database: insertion (BDGP_INS)
bgee - Bgee database for gene expression evolution
bindingdb - BindingDB database of measured binding affinities
biocyc - BioCyc collection of Pathway/Genome Databases
biogrid - BioGRID
biomodels - BioModels database of annotated published models
bionumbers - BioNumbers
biosystems - BioSystems
bipa - BIPA database for interaction between protein and nucleic acid
bloodexpress - BloodExpress database of gene expression in mouse heamatopoesis
blotbase - BlotBase Northern blots database
bndb - Biochemical network database (BNDB)
bold - Barcode of Life database (BOLD)
brenda - BRENDA comprehensive enzyme information system
brix - BriX classification of protein fragments
buchnerabase - BuchneraBase database of Buchnera species
butterflybase - ButterflyBase database of comparative Genomics of Lepidoptera

cabri - Common Access to Biotechnological Resources and Information (CABRI)
cadre - Central aspergillus data repository (CADRE)
cangem - CanGEM database of clinical tumor samples and microarray data
catdb - Complete Arabidopsis transcriptome database (CATdb)
cath - CATH protein structure classification database
catma - Arabidopsis transcriptome microarray database (CATMA)
cazy - Carbohydrate-active enzymes database (CAZy)
cbs - Genome atlas database (CBS)
cc+ - CC+ database of coiled-coil structures
ccap - Culture collection of algae and protozoa (CCAP)
cellcycledb - Cell cycle database (CellCycleDB)
celllinedb - Cell line database (CellLineDB)
cellmint - CellMINT database of protein localization and interactions
centrosome:db - Centrosomal proteins database (Centrosome:db)
cephdb - CEPH genotype database (CEPHdb)
cg - Comparative genometrics (CG) database
cdd - Conserved domain database (CDD)
cgd - Candida genome database (CGD)
chebi - Database of chemical entities of biological interest (ChEBI)
chembl - ChEMBL
chemidplus - ChemIDplus
citexplore - CiteXplore literature database
cleanex - CleanEx database of gene expression profiles
clima - Database for cell line integrated molecular authentication (CLIMA)
clustr - CluSTr protein classification database
cmr - Comprehensive microbial genome resource (CMR)
cogeme - Phytopathogenic fungi and oomycete EST database (COGEME)
colibase - ColiBase Enterobactericaiae genome database
cmd - Collagen Mutation Database (CMD)
columba - Columba protein structure annotation database
compluyeast-2dpage - COMPLUYEAST-2DPAGE database
conoserver - Cone snail toxin database (ConoServer)
consensuspathdb - ConsensusPathDB database of human functional interaction networks
corg - Comparative regulatory genomics database (CORG)
corum - CORUM comprehensive resource of mammalian protein complexes
coryneregnet4 - CoryneRegNet 4.0 cornyebacterial gene regulation database
cosmic - Catalogue of somatic mutations in cancer (COSMIC)
cornea-2dpage - Human cornea 2-DE database (Cornea-2DPAGE)
crest - Crop ESTs database (CREST)
crisprdb - Database of clustered regularly interspaced short palindromic repeats (CRISPRdb)
csa - Catalytic site atlas (CSA)
csdbase - Database of cold shock domain (CSD)-containing proteins (CSDBase)
ctd - Comparative Toxicogenomics Database (CTD)
cuticledb - Structural proteins of the arthropod cuticle (CuticleDB)
cyclebase - CycleBase cell cycle database
cygd - Comprehensive yeast genome database (CYGD)
cymobase - Database for cytoskeletal and motor proteins (CyMoBase)
cytokine - Cytokine gene polymorphism database

dali - Dali database of 3D structure alignments
dbali - DBAli structure alignment database
dbd - Transcription factor prediction database (DBD)
dbest - dbEST database of EST sequences
dbprobe - NCBI Probe database of nucleic acid reagents (dbProbe)
dbsnp - Database of single nucleotide polymorphism (dbSNP)
ddbj - DNA databank of Japan (DDBJ)
degradome - Degradome database of mammalian proteases and diseases
diamond - Blackfan Anemia mutation database (Diamond)
diark - diArk eukaryotic genome research database
diatom - Diatom EST database
dictybase - Dictyostelium discoideum online informatics resource (dictyBase)
dima - DIMA domain interaction map
dip - Database of interacting proteins (DIP)
diprodb - Dinucleotide property database (DiProDB)
disprot - Database of protein disorder (DisProt)
dnareplication - DNA replication database
dockground - Dockground database for molecular modelling of protein interactions
domino - DOMINO domain peptide interactions database
doop - Database of orthologous promoters (DoOP)
dosac-cobs-2dpage - DOSAC-COBS 2D-PAGE database
dpdb - Drosophila polymorphism database (DPDB)
dpvweb - DPVweb database of plant viruses
dqcs - The Database of Quantitative Cellular Signaling
drc - Database of ribosomal crosslinks (DRC)
drugbank - DrugBank drug and drug target database
dsd - Database of dehydrogenase stereospecificities (DSD)
dsmm - Database of simulated molecular motions (DSMM)
dssp - DSSP secondary structure database
dynaprot - DynaProt 2D proteome database of Lactococcus lactis

eased - EASED database
ecid - E Coli predicted protein interactions database (EcID)
eco2dbase - 2D-PAGE database of Escherichia coli
2dbase-ecoli - 2D-PAGE database of Escherichia coli
ecogene - EcoGene database of Escherichia coli sequence and function
echobase - EchoBASE: an integrated post-genomic database for E. coli
emap - Edinburgh Mouse Atlas project database (emap)
eds - Electron density server at Uppsala university (EDS)
ega - European genome-phenome Archive (EGA)
eggnog - Database of evolutionary genealogy of genes: non-supervised Orthologous Groups (eggNOG)
elm - Eukaryotic linear motif resource (ELM)
embl - The EMBL Nucleotide Sequence Database (EMBL)
emdb - Electron microscopy databank (EMDB)
emglib - Enhanced microbial genomes library (EMGlib)
ena - European nucleotide short read and trace archive (ENA)
endonet - Endocrine networks database (EndoNet)
ensembl - Ensembl eukaryotic genome annotation project
ensembl-genome - Ensembl-Genome
ensemblbacteria - Ensembl bacterial genome annotation project
ensemblfungi - Ensembl gungial genome annotation project
ensemblmetazoa - Ensembl invertebrate metazoan genome annotation project
ensemblplants - Ensembl plant genome annotation project
ensemblprotists - Ensembl protist genome annotation project
enzyme - Enzyme nomenclature database (ENZYME)
epd - Eukaryotic promoter database (EPD)
eric - Enteropathogen resource integration center (ERIC)
esldb - Eukaryotic subcellular localization database (eSLDB)
esp-soldb - Genomic generic database applied to tomato fruit quality (ESP-SOLDB)
esther - ESTHER database on alpha/beta hydrolases
euhcvdb - European Hepatitis C virus database (euHCVdb)
europhenome - EuroPhenome mouse phenotype resource
everest - Evolutionary ensembles of recurrent segments (EVEREST)
explorenz - ExplorEnz enzyme database
exprot - Database for proteins with an experimentally verified function (EXProt)
extopodb - Experimentally derived topological models of transmembrane proteins (ExTopoDB)
eyesite - EyeSite eye protein database

facd - Familial cancer database (FaCD)
fantom_db - Database of functional annotation of mammalian Genome (FANTOM_DB)
fastdb - Friendly alternative splicing and transcripts database (FASTDB)
fcp - Functional coverage of the proteome (FCP)
fgdb - Fusarium graminearum genome database (FGDB)
findbase - FINDBase
firedb - Database of functionally important residues from protein structures (FireDB)
flagdb++ - FLAGdb++ a database for the functional analysis of the Arabidopsis genome
flight - FLIGHT database integrating genomic and high-throughput data
flybase - FlyBase database of genetic and molecular data of Drosophila
flymine - FlyMine Drosophila genome database
flysnp - SNPs database for Drosophila (FLYSNP)
flytf - FlyTF Drosophila Site-Specific Transcription Factor Database
flyview - FlyView database
fpspd - Functional protein sequence pattern database (FPSPD)
funcoup - FunCoup database
fungalgenomesize - Fungal genome size database
funpep - FUNPEP information system for "low complexity sequence regions"
funshift - FunShift database
funsimmat - FunSimMat database of semantic and functional similarity
funybase - FUNYBASE fungal phylogenomic database
fusiondb - FusionDB database of bacterial and archaeal gene fusion events

g2cdb - Genes to cognition database (G2Cdb)
gabipd - GabiPD: primary database of plant integrative biology
gabi-kat - GABI-Kat tags mutagenised A. thaliana
gbiffi - Global biodiversity information facility, Finland (GBIFFI)
gdb - Human Genome Database (GDB)
genatlas - GenAtlas human gene database
genbank - GenBank nucleotide sequence database
genbank-dbsts - STS database maintained at the NCBI (dbSTS)
gene3d - Gene3D structural and functional annotation of protein families
geneannot - Affymetrix probe-sets database (GeneAnnot)
genecards - GeneCards database of human genes, protein and diseases
genedb - GeneDB database from Sanger Institute Pathogen Sequencing Units
genedb_spombe - Schizosaccharomyces pombe genome database (GeneDB_Spombe)
geneexpressiontooth - Gene expression in tooth database
genefarm - GeneFarm annotation of Arabidopsis thaliana gene and protein families
geneid - GeneID database of genes from NCBI RefSeq genomes
geneloc - GeneLoc map for human chromosomes
genenest - GeneNest transcript clusters
genenote - GeneNote human genes and their expression profiles
genesapiens - GeneSapiens human transcriptome database
genesnps - SNPs Program at the University of Washington (GeneSNPs)
genetide - GeneTide database
genetree - GeneTree
genevestigator - Genevestigator
genolevures - Genolevures 18 yeast genomes
genolist - GenoList comparative analysis of microbial genomes
genomereviews - GenomeReviews database of completely sequenced genomes
genomicthreadingdatabase - Genomic threading database
genomernai - GenomeRNAi database
germlinep53mutations - Germline p53 Mutations database
germonline - Gametogenesis and reproductive tissue expression
glycatebase - GlycateBase glycation prediction
glycomedb - Glycome database
glycosuitedb - GlycoSuiteDB glycan database
go - Gene ontology
goa - Gene ontology annotation database for UniProt (GOA-UniProt)
gold - Genomes database
golddb - GOLDDB database of genomics of lipid-associated disorders
gopubmed - GoPubMed ontology-based literature search
gpcrdb - Information system for G protein-coupled receptors (GPCRs)
gpcr_nava - GPCR natural variants database
glycosciencesdb - Glycosciences database
gpdb - A database of G-proteins,GPCRs,effectors and their interactions
gramene - Gramene database for comparative grass genomics
greenphyldb - A phylogenomic database for plant comparative genomics
grin - Germplasm Resources Information Network (GRIN)
gydb - Gypsy database of mobile genetic elements

h-invdb - H-InvDB integrated database of human genes and transcripts
haemb - Haemophilia B Mutation Database
hamap - High-quality automated and manual annotation of microbial proteomes (HAMAP)
hamasters - Haemophilia A FVIII mutation database (HAMASTERS)
hcad - Human chromosome aberration database (HCAD)
hepseq - HepSeq international repository for Hepatitis B virus strain data
hervd - Human endogenous retrovirus database (HERVd)
hgdp-ceph - HGDP-CEPH diversity panel database (HGDP-CEPH)
hgmd - Human gene mutation database (HGMD)
hgnc - Human gene nomenclature database (HGNC)
hgt-db - Horizontal gene transfer-database (HGT-DB)
hgvbaseg2p - Human Genome Variation database of Genotype-to-Phenotype information (HGVbaseG2P)
hic-up - Hetero-compound information (HIC-Up)
hmtdb - Human mitochondrial genomic database (HmtDB)
hogenom - Database of homologous sequences from complete genomes (HOGENOM)
hoinvgen - Homologous invertebrate genes database (HOINVGEN)
hovergen - Homologous vertebrate genes database (HOVERGEN)
homeoboxpage - HomeoboxPage homeobox gene page
homomint - HomoMINT inferred human protein interaction network
homstrad - Homologous structure alignment database (HOMSTRAD)
hoppsigen - Homologous processed pseudogenes database (Hoppsigen)
horde - Human olfactory receptor data explorer (HORDE)
hotsprint - Computational Hot Spots of Protein Interfaces (HotSprint) database
hpa - Human protein atlas (HPA) of expression and localization of proteins
hs3d - Homo sapiens splice sites dataset (HS3D)
hssp - Homology-derived secondary structure of proteins database (HSSP)
htpselex - HTPSELEX database of high-throughput SELEX libraries for transcription factor binding sites
huge - Human unidentified gene-encoded large proteins database (HUGE)
humanpax6 - Human PAX6 allelic variant database (HumanPAX6)
hmdb - Human Metabolome Database (HMDB)
humanmtdb - Human mitochondrial genome database (HumanMtDB)
husida - Human siRNA database
hvrbase++ - HvrBase++ phylogenetic database for primate species
hypercat - Bacillus cereus group Typing Database (HyperCAT)
hypercldb - HyperCLDB cell line database

iarctp53 - IARC TP53 mutation database
idbases - IDbases immunodeficiency mutation databases
idbases-btkbase - BTKbase database of X-linked agammaglobulinemia (XLA) mutations
imgt - The international immunogenetics database (IMGT)
imgt_hla - IMGT database of human MHC
imgt_3dstructure-db - IMGT 3D structure database for immunoglobulins (IG), T cell receptors (TR), MHC and RPI
imgt_gene-db - IMGT gene database for immunoglobulins (IG) and T cell recetors (TR)
imgt_ligm - IMGT nucleotide sequence database for immunoglobulins (IG) and T cell recetors (TR)
imgt_primer-db - IMGT primer database for immunoglobulins (IG) and T cell recetors (TR)
infevers - Familial mediterranean fever (FMF) mutations database (INFEVERS)
inparanoid - Inparanoid orthologs database
intact - IntAct protein interaction database and analysis system
integr8 - Integr8 genome and proteome database
integrall - INTEGRALL integron integrases and gene cassettes
intenz - Integrated relational enzyme database (IntEnz)
interpro - InterPro integrated database of protein families, domains, regions, repeats and functional sites
icd - International Classification of Diseases
icds - Interrupted coding sequences (ICDS)
ipd - Immuno polymorphism database (IPD)
ipd-estdab - Immuno polymorphism EST database (IPD-ESTDAB)
ipd-hpa - Immuno polymorphism human platelet antigens database (IPD-HPA)
ipd-kir - Immuno polymorphism killer-cell Immunoglobulin-like receptor database (IPD-KIR)
ipd-mhc - Immuno polymorphism major histocompatibility complex database (IPD-MHC)
ipi - International protein index (IPI)
irefindex - iRefIndex index of consolidated protein interactions
iresdb - Internal ribosome entry site database (IRESdb)
iresite - Database of experimentally verified IRES structures (IRESite)
isfinder - Insertion sequence elements database (ISfinder)
isola - Italian Solanaceae genome resource (ISOLA)
its2 - Internal transcribed spacer 2 sequences (ITS2)
ittaca - Integrated tumor transcriptome array and clinical data analysis (ITTACA)
iupac - IUPAC nomenclature database
iuphar-db - IUPHAR database
ixdb - Integrated X chromosome database (IXDB)

jail - JAIL structure-based interface library for macromolecules
jaspar - JASPAR eukaryotic transcription factor binding profiles
jcm - Japan collection of microorganisms
jenalib - Jena library of biological macromolecules (JenaLib)
jpgv - Jena prokaryotic genome viewer (JPGV)
jws - JWS Online

karyotypedb - Karyotype features from different animals and plants
kegg - Kyoto encyclopedia of genes and genomes (KEGG)
kdd - Kidney development database
kinmutbase - KinMutBase registry of disease-causing mutations in protein kinase domains database
kinomer - Kinomer database
knottin - KNOTTIN database

l1base - LINE-1 human and rodent
leger - LEGER genome database for Listeria research
legiolist - Legionella pneumophila genome database
leproma - Mycobacterium leprae genome database
lgicdb - Ligand-gated ion channel database (LGICdb)
ligasite - Ligand attachment site database (LigAsite)
lipidbank - LipidBank
lmsd - LIPID MAPS Structure Database (LMSD)
lipaseengineering - Lipase engineering database
lumbribase - Lumbricus rubellus genome project database

maizegdb - Maize genetics and genomics database (MaizeGDB)
mamep - Molecular anatomy of mouse embryo project (MAMEP)
mampol - Mammalia polymorphism database (MamPol)
mapu - Max-Planck unified proteome database (MAPU)
matdb - Arabadopsis genome database (MAtDB)
matrixdb - MatrixDB
macie - Mechanism, annotation and classification in enzymes (MACiE) database
medobis - Mediterranean ocean biogeographic information system (MedOBIS)
megx - MeGX marine microbial ecological genomics database
mmmp - Melanoma Molecular Map Project (MMMP) i
mepd - Medaka expression pattern database (MEPD)
merops - MEROPS peptidase database
metacrop - MetaCrop database of metabolic pathways in crop plants
metagrowth - MetaGrowth database of culture conditions of obligate parasitic bacteria
metal-macie - Metal-MACiE database of metals involved in biological catalysis
methdb - MethDB DNA methylation database
mfungd - MIPS mouse functional genome database (MfunGD)
mgi - Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
micado - Microbial advanced database organisation (Micado)
modeldb - ModelDB
mmdb - Molecular Modeling DataBase (MMDB)
mtrdb - Microorganisms tandem repeats database
mim - Online Mendelian inheritance in Man (OMIM)
mint - Molecular interaction Database (MINT)
mipsplantsdb - MIPS plants database
mirbase - miRBase database
miriam - MIRIAM resources
mirortho - miROrtho animal microRNA database
monosaccharidedb - Monosaccharide database
mmruv - MMR Gene Unclassified Variants Database
mitodrome - OXPHOS genes in Drosophila
mitop2 - Mitochondrial proteome database
mitores - MitoRes resource for mitochondria-related genes, transcripts and proteins
mlvabank - Bacterial MLVA-genotyping service (MLVAbank)
mmsinc - MMsINC chemoinformatics database
mncdb - MNCDB Neurospora crassa genome database
modbase - ModBase database of comparative protein structure models
modomics - Database of RNA modification pathways
moka - MoKCa database of mutations of kinases in cancer
molligen - MolliGen Mollicutes database
mosaic - MOSAIC bacterial genome comparison database
mosdb - MOsDB rice genome database
mousesage - MouseSAGE serial analysis of gene expression database
mousebook - MouseBook data from MRC Harwell
mpact - MPact: Representation of Interaction Data at MIP
mugen - MUGEN mouse database
mumdb - MIPS Ustilago maydis Database (MUMDB)
myhits - MyHits protein domains database

naproc-13 - NAPROC-13 natural products 13C NMR database
narcisse - Narcisse mirror view of conserved synteny
nbrc - NITE biological resource center
ncl - NCL Mutation Database
ncrnas - ncRNAs database
nembase - NEMBASE database for analysis of nematode ESTs
nesbase - NESbase database of leucine-rich nuclear export signals
neuromorpho - NeuroMorpho
neurondb - NeuronDB
nextbio - NextBio gene-centric data for human, mouse, rat, fly, worm and yeast
nextdb - Nematode expression pattern dataBase (NextDB)
nextprot - neXtProt; the human protein knowledge platform
niaest - NIA mouse cDNA project
nmpdr - National microbial pathogen
nmrshift - NMRShift database of organic structure NMR spectra
nopdb - Nucleolar proteome database (NOPDB)
norine - NORINE database of nonribosomal peptides
npc-db - Niemann-Pick Type C mutations
npd - Nuclear protein database (NPD)
nrestdb - Natural rubber EST database (NRESTdb)
nrsub - Non-Redundant B.subtilis database (NRSub)
nurebase - Nuclear receptor database (NUREBASE)

oglycbase - O-GlycBase database
ogp - Oxford glycoProteomics 2-DE database (OGP)
oma - Identification of orthologs from complete genome data (OMA database)
optic - Orthologous and paralogous transcripts in clades (OPTIC) database
orenza - Database of orphan enzyme activities (ORENZA)
orphanet - Orphanet portal for rare diseases and orphan drugs
orthodb - Orthologous groups database (OrthoDB)
orygenesdb - Database for rice reverse genetics (OryGenesDB)
oryza - Oryza tag line
osteogenesis - Osteogenesis imperfecta and type III collagen mutations

p53famtag - p53FamTaG direct target genes
pairsdb - PairsDB BLAST and PSI-BLAST alignments
pandit - Protein and associated nucleotide domains with inferred trees (PANDIT)
pandora - PANDORA visualization and annotation for protein sets
panther - Protein analysis through evolutionary relationships (PANTHER)
parameciumdb - Database for the model organism Paramecium tetraurelia (ParameciumDB)
pathema - Pathema: a clade-specific bioinformatics resource
pathoplant - PathoPlant database of plant-pathogen interactions and Arabidopsis expression
cpath - Pathway Commons database
pathway_interaction_db - NCI-Nature pathway interaction database
pdb - The RCSB Protein Data Bank
pdbe - PDBe protein structure database in Europe
pdbfinder - PDBFINDER reformatted PDB files
pdbfun - PDBfun annotated protein structures
pdb-redo - PDB-redo database of re-refined PDB entries
pdbreport - Structure validation reports for PDB entries (PDBREPORT)
pdbselect - PDBselect database of representative PDB chains
pdbsum - PDBsum overview of macromolecular structures
pdbtm - Transmembrane proteins from PDB (PDBTM)
ped - Pancreatic expression database (PED)
pedant - PEDANT3 protein extraction, description and analysis tool
pepseeker - PepSeeker database of proteome peptide identifications for investigating fragmentation patterns
peptaibol - Peptaibol database of natural fungal peptides
peptideatlas - PeptideAtlas peptide database
peptidedb - PeptideDB database of bioactive signaling peptides
peroxibase - PeroxiBase peroxidase family database
peroxisomedb - Peroxisome database (PeroxisomeDB)
pespotdb - Pepspot database (PespotDB) of peptide chip data
pfam - Pfam protein domain database
pgn - Plant Genome Network (PGN)
pharmgkb - The pharmacogenetics and pharmacogenomics knowledge base (PharmGKB)
phenomicdb - PhenomicDB cross-species genotype/phenotype database
phci-2dpage - Parasite host cell interaction 2D-PAGE database (PHCI-2DPAGE)
phi-base - PHI-base pathogen host interactions database
phosphat - Arabidopsis experimental phosphorylation sites database (PhosPhAt)
phosphoelm - PhosphoELM database of S/T/Y phosphorylation sites
phospho3d - PHOSPHO3D structures of phosphorylation sites
phosphopep - PhosphoPep database of MS-derived phosphorylation data from 4 organisms
phosphosite - Phosphorylation site database
phossite - Phosphorylation site database for Archaea and Bacteria
phylomedb - PhylomeDB database of phylogenetic trees for all proteins
phylopat - PhyloPat database of phylogenetic patterns
phytoprot - PhytoProt protein clusters database
pips - Human protein-protein interaction prediction (PIPs)
pir - Protein sequence database of the Protein Information Resource (PIR)
pirsf - PIRSF whole-protein classification database
plantdnac-values - Plant DNA C-values database (PlantDNAC-values)
plantsnorna - Plant snoRNA database
plantcare - Plant cis acting element
plantmarkers - PlantMarkers database of predicted molecular markers from plants
plant-pis - PLANT-Pis database for protease inhibitors and their genes in higher plants
plantprom - PlantProm database of experimental plant promoter and transcription start site
plasmodraft - Predictions of Plasmodium falciparum gene function
plmitrna - PLMItRNA database of tRNAs in plant mitochondria
plprot - Plastid proteins database (Plprot)
pmap-cutdb - PMAP-CutDB proteolytic event database
pmdb - Protein model database (PMDB)
polymorphix - Polymorphix intraspecific sequence polymorphism database
pomamo - PoMaMo potato maps database
ppd - PPD protein pKa values database
ppnema - rRNA genes from plant-parasitic nematodes (PPNEMA)
pptasedb - Prokaryotic protein phosphatase database (PptaseDB)
predict - preDiCT database of drug effects on the heart
pride - PRIDE proteomics identifications database
prints - PRINTS protein motif fingerprint database
prism - Prism protein interaction by structural matching
probebase - probeBase database of rRNA-targeted oligonucleotide probes
procmd - ProCMD 3D protein C mutations database
procognate - PROCOGNATE ligand domain mapping for enzymes
prodom - ProDom protein domain database
prodoric - PRODORIC prokaryotic database of gene regulation
promec - PromEC verified E. coli promoters
promex - ProMEX protein mass spectral library
prophecy - PROPHECY profiling of phenotypic characteristics in yeast
prorule - ProRule collection of rules based on PROSITE predictors
prosas - Protein Structure and Alternative Splicing database (ProSAS)
prosat2 - PROSAT2 protein structure annotation tool
prosite - A Database of protein domains, families and functional sites
protclustdb - Entrez Protein Clusters
proteinmodelportal - Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase
protonet - ProtoNet automatic hierarchical classification of proteins
protepedia - Protepedia collaborative 3D protein encyclopedia
proteus - Protein terminus short linear sequences
pseudobase - PseudoBase RNA pseudoknots database
pseudocap - PseudoCAP pseudomonas genome database
pstiing - Protein, signalling, transcriptional interactions and inflammation networks gateway (pSTIING)
ptch - PTCH mutation database
pubchem - PubChem
pubmeth - PubMeth reviewed methylation database in cancer
pmma-2dpage - Purkyne Military Medical Academy 2D-PAGE database

rat-heart-2dpage - 2-DE database of rat heart, at German Heart Institute Berlin, Germany
ratmap - RATMAP rat genome database
rdg - Rat genome database (RDG)
rb1genemutation - RB1 gene mutation database (RB1GeneMutation)
reactome - Reactome knowledgebase of biological pathways
rebase - REBASE restriction enzymes and methylases database
redidb - RNA editing database (REDIdb)
refseq - NCBI reference sequences
repairtoire - REPAIRtoire DNA repair pathways
reproduction-2dpage - REPRODUCTION-2DPAGE database
resid - RESID database of protein modifications
retroryza - RetrOryza database of rice LTR retrotransposons
rfam - RNA families database of alignments and CMs
rgd - Rat genome database
rhea - Rhea
rouge - Rodent unidentified gene-encoded large proteins database (Rouge)
rissc - Ribosomal internal spacer sequence collection (RISSC)
rna-frabase - RNA FRABASE database
rnavirusdb - RNA virus genome database (RNAVirusDB)
rnrdb - Ribonucleotide reductase database (RNRdb)
rsitedb - RNA binding site database (RsiteDB)
rtkdb - Receptor tyrosine kinase database (RTKdb)
rtprimerdb - PCR primers and probes database (RTPrimerDB)

s_martdb - The S/MAR transaction database (S/MARtDB)
s4 - S4 structure-based sequence alignments of SCOP superfamilies
sabio-rk - Database for biochemical reactions and their kinetics.
saffron_genes - Saffron genes database
scop - Structural classification of proteins (SCOP) database
scoppi - Structural Classification of Protein-Protein Interfaces (SCOPPI)
scowl - Structural characterization of water, ligands and proteins (SCOWL)
seattlesnps - SeattleSNPs variation discovery resource
sebida - Sebida sex-biased genes
seed - The SEED genome comparison environment
selectome - Selectome database of positive selection
sgd - Saccharomyces genome database (SGD)
siena-2dpage - 2D-PAGE database from the Department of Molecular Biology, University of Siena, Italy
signalinggateway - UCSD-Nature Signaling Gateway Molecule Pages
silva-lsu - SILVA ribosomal RNA sequence data (large subunit)
silva-ssu - SILVA ribosomal RNA sequence data (small subunit)
simap - Similarity matrix of proteins (SIMAP)
sirnadb - siRNAdb database
sisyphus - SISYPHUS database of protein structure alignments
sitesbase - SitesBase database
smpdb - Small Molecule Pathway Database (SMPDB)
smart - Simple modular architecture research tool (SMART)
smr - A database of annotated 3D protein structure models
snap - SNAP database of human gene variations
snappi - SNAPPI database of structures, interfaces and alignments for protein-protein interactions
sno_scarnabase - Small nucleolar RNA and small cajal body-specific RNA database (sno/scaRNAbase)
snornabase - snoRNABase database of human H/ACA and C/D box snoRNAs
snpeffect - SNPeffect database of molecular phenotyping of human SNPs and disease mutations
snpnexus - SNPnexus database for SNP selection
snpstr - SNPSTR databasee
source - The Stanford online universal resource for Clones and ESTs (SOURCE)
soybase - SoyBase soybean genome database
spliceaid - SpliceAid database of strictly experimentally assessed target RNA sequences in humans
splicenest - SpliceNest database
spodobase - Spodoptera frugiperda database (SpodoBase)
stcdb - Signal transduction classification database (STCDB)
stitch - STITCH chemical-protein interactions
straininfo.net - StrainInfo.net bioportal
strepto-db - Strepto-DB comparative genomics of group A and group B streptococci
string - STRING protein-protein interaction database
structurallyconservedinterfaces - Structurally conserved interfaces
sulfolobus - Sulfolobus genome database
superdrug - SuperDrug drug database
supfam - Superfamily database of structural and functional annotation
superhapten - SuperHapten immunogenic compound database
supernatural - SuperNatural natural compound database
superscent - Superscent database of scents
supersite - SuperSite dictionary of metabolite and drug binding sites in proteins
supertarget-matador - SuperTarget and Matador database
supertoxic - Supertoxic toxic compounds database
surface - SURFACE database of protein surface patches
swiss-2dpage - Two-dimensional polyacrylamide gel electrophoresis database (SWISS-2DPAGE)
swissregulon - SwissRegulon database of regulatory site annotations
systers - SYSTERS protein family database
systomonas - Systomonas database for systems biology of Pseudomonads
sysznfc2h2 - C2H2 zinc finger gene database (SysZNFC2H2)

t1dbase - Type 1 diabetes database (T1Dbase)
taed - The adaptive evolution database (TAED)
tair - The Arabidopsis information resource (TAIR)
tarbase - miRNA target database (TarBase)
tassdb - Tandem splice site database
taxon - NCBI's taxonomic identifier
tbmap - Mapping names in TreeBASE
tcacycle - TCA cycle gene mutation database
tcdb - Transport classification database
tdr - TDR targets database
1000genomes - The 1000 Genomes project
ttd - Therapeutic Target Database (TTD)
tigr - The bacterial database(s) of The Institute of Genome Research
tigrfams - A protein family database
tmadb - Tissue microarray database
tomatestdb - An EST database from multiple Tomato species
topdb - Topology of transmembrane proteins
topdom - Transmembrane domains and motifs
t3db - Toxin and Toxin Target Database (T3DB)
transdab - Database of transglutaminase substrate proteins
transpath - TRANSPATH database
transpogene - Transposed elements in proteins for 7 organisms
trbase - Tandem repeats database
treefam - Phylogenetic trees of animal genes
trnasequences - tRNA sequences database
tropgene-db - TropGENE database
trsdb - TrSDB transcription factors
tuberculist - Mycobacterium tuberculosis strain H37Rv genome database

u12db - U12-type intron database
ucd-2dpage - University College Dublin 2-DE Proteome Database
ucsc - UCSC genome browser
umd-dmd - UMD-DMD France genotype-phenotype dystrophinopathy patients
unigene - UniGene gene-oriented nucleotide sequence clusters
unihi - Unified human interactome database
unilib - Unified library database
unipathway - Unipathway
unisave - Uniprot version archive
unists - NCBI database of sequence tagged sites
unite - UNITE rDNA sequences from ectomycorrhizal asco- and basidiomycetes
unitrap - UniTrap gene trap clones
umd - Universal mutation database
uniparc - UniProt Archive
uniprot - Universal protein resource
uniprotkb_swiss-prot - Universal protein resource knowledge base / Swiss-Prot
uniprotkb_trembl - Universal protein resource knowledge base / Swiss-Prot
uniref - Non-redundant reference (UniRef) databases
utilldb - URGV TILLING platform databases
utrdb - Regulatory motifs in eukaryotic UTRs
utrsite - Regulatory motifs in eukaryotic UTRs

vbase2 - Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse
vectorbase - Invertebrate vectors of human pathogens
vega - Vertebrate Genome Annotation (VEGA) database
vida - Virus Database at University College London
virusmint - Viral protein interaction
vsgdb - A database of trypanosomal variant surface glycoproteins

worfdb - The C.elegans ORFeome cloning project
world-2dpage - The world-2DPAGE database
wormbase - Caenorhabditis elegans genome database
world-2dpage_cgl14067-2dpage - World-wide gel-based proteomics database (CGL14067-2DPAGE)
world-2dpage_nibr_2d-page - World-wide gel-based proteomics database (NIBR 2D-PAGE)
world-2dpage_0003 - World-wide gel-based proteomics database (0003) for Arabidopsis thaliana leaf proteome
world-2dpage_0004 - World-wide gel-based proteomics database (0004) for mature rat olfactory bulb
world-2dpage_0005 - World-wide gel-based proteomics database (0005) for Botrytis cinerea mycelium cultured in carboxymethyl cellulose
world-2dpage_0006 - World-wide gel-based proteomics database (0006) for hemolymph proteome of the honeybee

xenbase - Xenopus laevis and tropicalis biology and genomics resource

yeast_complexes - Yeast complexes database
yeast-gfp - Yeast GFP fusion localization database
yeastract - Transcriptional regulators database
ygob - Yeast gene order browser
ymgv - Yeast microarray global viewer

zfin - Zebrafish information network genome database