YEASTRACT

Transcriptional regulators database

A curated repository of more than 34469 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1000 bibliographic references. It also includes the description of 291 specific DNA binding sites for more than a hundred characterized TFs.

IDYEASTRACT
Homehttp://www.yeastract.com
EDAM topicGene regulatory networks
EDAM topicNucleic acid functional sites
EDAM topicTranscription
EDAM topicTranscription factor and binding site
EDAM topicFungal
TaxonSaccharomyces cerevisiae

Available data

Data Format Query Link
Gene annotation HTML ORF name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Protein report HTML ORF name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Ontology metadata {GO information} HTML ORF name http://www.yeastract.com/view.php?existing=go&orfname=%s
Gene annotation HTML Gene name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Protein report HTML Gene name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Ontology metadata {GO information} HTML Gene name http://www.yeastract.com/view.php?existing=go&orfname=%s
Gene annotation HTML Protein name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Protein report HTML Protein name http://www.yeastract.com/view.php?existing=locus&orfname=%s
Ontology metadata {GO information} HTML Protein name http://www.yeastract.com/view.php?existing=go&orfname=%s
Gene annotation (expression) {Regulation reference} HTML Transcription factor name; Gene name {target gene} http://www.yeastract.com/view.php?existing=regulation&proteinname=%s1&orfname=%s2
Gene annotation (expression) {Regulation reference} HTML Transcription factor name; ORF name {target ORF} http://www.yeastract.com/view.php?existing=regulation&proteinname=%s1&orfname=%s2
Protein report (transcription factor) {TF binding site reference} HTML Transcription factor name; Identifier {Consensus sequence} http://www.yeastract.com/view.php?existing=consensus&proteinname=%s1&consensus=%s2
Protein report (transcription factor) {Documented regulators of a given set of genes} HTML Gene name http://www.yeastract.com/findregulators.php?type=doc&genes=%s
Gene annotation {Documented target genes of a given set of TFs} HTML Transcription factor name http://www.yeastract.com/findregulated.php?type=doc&tfs=%s

Example queries

Data Format Query Example
Gene annotation {Documented target genes of a given set of TFs} HTML Transcription factor name Nrg1p