RFAM

RNA families database of alignments and CMs

Collection of multiple sequence alignments and covariance models covering many common non-coding RNA families. The main use of Rfam is as a source of RNA multiple alignments with consensus secondary structure annotation in a consistent format.

IDRFAM
IDaltRFam
Homehttp://rfam.sanger.ac.uk/
EDAM topicNucleic acid sequence alignment
EDAM topicRNA structure and alignment
CategoryNot available
Taxonall

Available data

Data Format Query Link
RNA family annotation HTML RFAM accession http://rfam.sanger.ac.uk/family?acc=%s
RNA family annotation HTML RFAM name http://rfam.sanger.ac.uk/family?acc=%s
RNA family annotation XML RFAM accession http://rfam.sanger.ac.uk/family?acc=%s&output=xml
RNA family annotation XML RFAM name http://rfam.sanger.ac.uk/family?acc=%s&output=xml

Example queries

Data Format Query Example
RNA family annotation HTML RFAM accession RF00522
RNA family annotation XML RFAM accession RF00522
RNA family annotation HTML RFAM name PreQ1
RNA family annotation XML RFAM name PreQ1