H-InvDB

H-InvDB integrated database of human genes and transcripts

From extensive analyses of all human transcripts, H-InvDB provides curated annotations of human genes and transcripts that include gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, and molecular evolutionary features , protein-protein interactions (PPIs) and gene families/groups.

IDH-InvDB
AccDB-0040
Homehttp://www.h-invitational.jp/
EDAM topicGene expression and regulation
EDAM topicGene expression profiling
EDAM topicMutation and polymorphism
EDAM topicMetabolic pathways
EDAM topicHuman disease
EDAM topicOrganism
EDAM topicFunctional RNA
EDAM topicGene structure
EDAM topicProtein targeting and localization
CategoryOrganism-specific databases
TaxonHomo sapiens

Available data

Data Format Query Link
Gene annotation (transcript) HTML HIT ID http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=%s
Gene annotation HTML HIX ID http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=%s
Gene annotation (transcript) Text HIT ID http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=%s&status=flat
Gene annotation Text HIX ID http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0005064&status=flat
Gene annotation (transcript) XML HIT ID http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000053961&status=xml
Gene annotation XML HIX ID http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0005064&status=xml

Example queries

Data Format Query Example
Gene annotation (transcript) HTML HIT ID HIT000053961
Gene annotation (transcript) Text HIT ID HIT000053961
Gene annotation (transcript) XML HIT ID HIT000053961
Gene annotation HTML HIX ID HIX0005064
Gene annotation Text HIX ID HIX0005064
Gene annotation XML HIX ID HIX0005064