EcID

E Coli predicted protein interactions database (EcID)

Results of running an "in silico 2 hybrid system" for all the possible pairs among E. coli proteins.

IDEcID
Homehttp://www.pdg.cnb.uam.es/i2h/info.html
EDAM topicProtein-protein interactions
TaxonEscherichia coli

Available data

Data Format Query Link
Data reference {Protein sequence ID table} HTML Protein identifier http://ecid.bioinfo.cnio.es/Php/PreQuery.php?busca=%s
Protein-protein interaction {Predictions Mode} HTML Protein identifier; Protein ID (EcID); Gene symbol http://ecid.bioinfo.cnio.es/Php/Summary.php?view=pred&ID=%s1&seq=%s2&gn=%s3
Protein-protein interaction {Experimental Mode} HTML Protein identifier; Protein ID (EcID); Gene symbol http://ecid.bioinfo.cnio.es/Php/Summary.php?ID=%s1&seq=%s2&gn=%s3&view=exp
Protein report HTML Protein identifier; Protein ID (EcID); Gene symbol http://ecid.bioinfo.cnio.es/Php/ProtInfo.php?busca=%s1seq=%s2&gn=%s3

Example queries

Data Format Query Example
Data reference {Protein sequence ID table} HTML Protein identifier NRDD_ECOLI
Protein-protein interaction {Predictions Mode} HTML Protein identifier; Protein ID (EcID); Gene symbol NRDD_ECOLI;1639;nrdD
Protein-protein interaction {Experimental Mode} HTML Protein identifier; Protein ID (EcID); Gene symbol NRDD_ECOLI;1639;nrdD
Protein report HTML Protein identifier; Protein ID (EcID); Gene symbol NRDD_ECOLI;1639;nrdD