CDD

Conserved domain database (CDD)

A collection of multiple sequence alignments for ancient domains and full-length proteins.

IDCDD
Homehttp://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
EDAM topicProtein sequence alignment
EDAM topicSequence clustering
EDAM topicProtein domains
CategoryNot available
Taxonall

Available data

Data Format Query Link
Sequence alignment (protein) {Conserved Domain Summary} HTML CDD ID http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%s
Sequence alignment (protein) {Conserved Domain Summary} HTML CDD PSSM-ID http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%s
Protein family annotation {Conserved Domain Document Summary} HTML CDD ID http://www.ncbi.nlm.nih.gov/sites/cdd?term=%s[Accn]
Protein family annotation {Conserved Domain Document Summary} HTML CDD PSSM-ID http://www.ncbi.nlm.nih.gov/cdd/%s
Protein family annotation {Conserved Domain description} XML CDD PSSM-ID http://www.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=cdd&id=%s&retmode=xml
Protein features (domains) {Conserved Protein structure report (domain)} HTML Sequence accession (protein) http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?seqinput=%s
Protein features (domains) {Conserved Protein structure report (domain)} HTML GI number (protein) http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?seqinput=%s
Protein features (domains) {Conserved Protein structure report (domain)} XML Sequence accession (protein) http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?seqinput=%s&output=xml
Protein features (domains) {Conserved Protein structure report (domain)} XML GI number (protein) http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?seqinput=%s&output=xml

Example queries

Data Format Query Example
Sequence alignment (protein) {Conserved Domain Summary} HTML CDD PSSM-ID 153083
Protein family annotation {Conserved Domain Document Summary} HTML CDD PSSM-ID 153083
Protein family annotation {Conserved Domain description} XML CDD PSSM-ID 153083
Sequence alignment (protein) {Conserved Domain Summary} HTML CDD ID cd00576
Protein family annotation {Conserved Domain Document Summary} HTML CDD ID cd00576
Protein features (domains) {Conserved Protein structure report (domain)} HTML Sequence accession (protein) P26675
Protein features (domains) {Conserved Protein structure report (domain)} XML Sequence accession (protein) P26675
Protein features (domains) {Conserved Protein structure report (domain)} HTML GI number (protein) 76800652
Protein features (domains) {Conserved Protein structure report (domain)} XML GI number (protein) 76800652