BioCyc

BioCyc collection of Pathway/Genome Databases

BioCyc collection of Pathway/Genome Databases. Each BioCyc database describes the genome and metabolic pathways of a single organism. This includes Escherichia coli K-12 MG1655 model-organism database (EcoCyc) and Multiorganism metabolic pathway and enzyme database (MetaCyc)

IDBioCyc
AccDB-0005
Homehttp://www.biocyc.org/
EDAM topicGenomes
EDAM topicEnzymes
EDAM topicMetabolic pathways
CategoryEnzyme and pathway databases
CategoryMetabolic pathways database
Taxonall
Linkinghttp://biocyc.org/linking.shtml

Available data

Data Format Query Link
Metadata and report HTML Identifier {BioCyc} http://biocyc.org/getid?id=%s
Pathway or network report HTML Pathway ID (BioCyc) http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=%s
Small molecule report HTML Compound ID (BioCyc) http://biocyc.org/ECOLI/NEW-IMAGE?type=COMPOUND&object=%s
Reaction annotation HTML Reaction ID (BioCyc) http://biocyc.org/ECOLI/NEW-IMAGE?type=REACTION&object=%s
Protein report (enzyme) HTML Enzyme ID (BioCyc) http://biocyc.org/ECOLI/new-image?type=ENZYME&object=%s
Cytogenetic map HTML Chromosome name http://biocyc.org/ECOLI/substring-search?type=%s
Genome map HTML Gene ID (EcoGene) http://biocyc.org/ECOLI/new-image?type=LOCUS-POSITION&object=%s
Genome map HTML Identifier {Map position} http://biocyc.org/ECOLI/substring-search?type=MAPTICK&object=%s

Example queries

Data Format Query Example
Pathway or network report HTML Pathway ID (BioCyc) GLYCOLYSIS
Small molecule report HTML Compound ID (BioCyc) FRUCTOSE-6P
Reaction annotation HTML Reaction ID (BioCyc) PGLUCISOM-RXN
Protein report (enzyme) HTML Enzyme ID (BioCyc) PGLUCISOM
Cytogenetic map HTML Chromosome name COLI-K12
Genome map HTML Gene ID (EcoGene) EG11024
Genome map HTML Identifier {Map position} None