ASTD

Alternative splicing and transcript diversity (ASTD) database

Alternative splicing and transcript diversity.

IDASTD
Homehttp://www.ebi.ac.uk/astd/
EDAM topicGene structure
Taxonall

Available data

Data Format Query Link
Gene annotation HTML Gene ID (Ensembl) http://www.ebi.ac.uk/astd/geneview.html?acc=%s
Gene annotation EMBL format Gene ID (Ensembl) http://www.ebi.ac.uk/astd/geneview.html?acc=%s&export=embl
Gene annotation FASTA format Gene ID (Ensembl) http://www.ebi.ac.uk/astd/geneview.html?acc=%s&export=fasta
Gene annotation GFF Gene ID (Ensembl) http://www.ebi.ac.uk/astd/geneview.html?acc=%s&export=gff
Gene annotation GTF Gene ID (Ensembl) http://www.ebi.ac.uk/astd/geneview.html?acc=%s&export=gtf
Gene annotation (transcript) HTML ASTD ID http://www.ebi.ac.uk/astd/transview.html?acc=%s
Gene annotation (transcript) EMBL format ASTD ID http://www.ebi.ac.uk/astd/transview.html?acc=%s&export=embl
Gene annotation (transcript) GFF ASTD ID http://www.ebi.ac.uk/astd/transview.html?acc=%s&export=gff
Gene annotation (transcript) GTF ASTD ID http://www.ebi.ac.uk/astd/transview.html?acc=%s&export=gtf
Protein report HTML Protein ID (Ensembl) http://www.ebi.ac.uk/astd/peptideview.html?acc=%s
Protein report FASTA format Protein ID (Ensembl) http://www.ebi.ac.uk/astd/peptideview.html?acc=%s&export=fasta
Gene features (exon) HTML ASTD ID (exon); ASTD ID http://www.ebi.ac.uk/astd/featureview.html?acc=%s1&trans=%s2
Gene features (intron) HTML ASTD ID (intron); ASTD ID http://www.ebi.ac.uk/astd/featureview.html?acc=%s1&trans=%s2
Gene features (promoter) {TSS} HTML ASTD ID (tss); ASTD ID http://www.ebi.ac.uk/astd/featureview.html?acc=%s1&trans=%s2
Nucleic acid features (PolyA signal) HTML ASTD ID (polya) http://www.ebi.ac.uk/astd/featureview.html?acc=%s

Example queries

Data Format Query Example
Gene features (exon) HTML ASTD ID (exon); ASTD ID EXON00000830017;TRAN00000134394
Gene features (intron) HTML ASTD ID (intron); ASTD ID INTR00000830053;TRAN00000134394
Gene annotation (transcript) HTML ASTD ID TRAN00000134394
Gene annotation (transcript) EMBL format ASTD ID TRAN00000134394
Gene annotation (transcript) GFF ASTD ID TRAN00000134394
Gene annotation (transcript) GTF ASTD ID TRAN00000134394
Gene annotation HTML Gene ID (Ensembl) ENSG00000148680
Gene annotation EMBL format Gene ID (Ensembl) ENSG00000148680
Gene annotation FASTA format Gene ID (Ensembl) ENSG00000148680
Gene annotation GFF Gene ID (Ensembl) ENSG00000148680
Gene annotation GTF Gene ID (Ensembl) ENSG00000148680
Protein report HTML Protein ID (Ensembl) PEPT00000029170
Protein report FASTA format Protein ID (Ensembl) PEPT00000029170